Reading list for Gastrodia group
READING LIST FOR GASTRODIA GROUP:
Babikova Z, Gilbert L, Bruce TJA, Birkett M, Caulfield JC, Woodcock C, Pickett JA, Johnson D. Underground signals carried through common mycelial networks warn neighbouring plants of aphid attack. Ecol Lett. 2013 Jul; 16(7):835-43
Fungal nutrient allocation in common mycorrhizal networks is regulated by the carbon source strength of individual host plants. New Phytologist (2014) 203: 646–656. doi: 10.1111/nph.12827
Testing the link between community structure and function for ectomycorrhizal fungi involved in a global tripartite symbiosis. New Phytologist (2014) 202: 287–296 doi: 10.1111/nph.12638
Fungal nutrient allocation in common mycorrhizal networks is regulated by the carbon source strength of individual host plants. New Phytologist (2014) 203: 646–656 doi: 10.1111/nph.12827
The sucrose transporter SlSUT2 from tomato interacts with brassinosteroid functioning and affects arbuscular mycorrhiza formation. The Plant Journal 2014 78: 877-889
Fatty acid synthesis and lipid metabolism in the obligate biotrophic fungus Rhizophagus irregular is during mycorrhization of Lotus japonicas. The Plant Journal 2014 79: 398-412
Sept. 24, 2014
Laura M. Cox, Shingo Yamanishi, Jiho Sohn, Alexander V. Alekseyenko, Jacqueline M. Leung, Ilseung Cho, Sungheon G. Kim, Huilin Li, Zhan Gao, Douglas Mahana, Jorge G. Zárate Rodriguez, Arlin B. Rogers, Nicolas Robine, P’ng Loke, Martin J. Blaser. 2014. Altering the Intestinal Microbiota during a Critical Developmental Window Has Lasting Metabolic Consequences. Cell 158:705-721.
Takuya Suzaki, Masayoshi Kawaguchi 2014. Root nodulation: a developmental program involving cell fate conversion triggered by symbiotic bacterial infection. 16-22
Makoto Hayashi, Martin Parniske 2014. Symbiosis and pathogenesis: What determines the difference? Current Opinion in Plant Biology 20: v-vi
Tina Romeis, Marco Herde 2014. Actinorhizal root nodule symbioses: what is signalling telling on the origins of nodulation? 20: 11-18.
Bilal Ökmen, Gunther Doehlemann 2014. Inside plant: biotrophic strategies to modulate host immunity and metabolism. 20: 19-25.
Caroline Gutjahr 2014. Phytohormone signaling in arbuscular mycorhiza development. 20: 26-34.
Alga Zuccaro, Urs Lahrmann, Gregor Langen 2014. Broad compatibility in fungal root symbioses. 20: 135-145.
Samy Carbonnel and Caroline Gutjahr 2014 Control of arbuscular mycorrhiza development by nutrient signals. Front. Plant Sci., 11 September 2014 | doi: 10.3389/fpls.2014.00462
Tom Laloum, Maël Baudin, Lisa Frances, Agnes Lepage, Benjamin Billault-Penneteau, Marion R. Cerri, Federico Ariel, Marie-Françoise Jardinaud, Pascal Gamas, Fernanda de Carvalho-Niebel and Andreas Niebel 2014. Two CCAAT-box-binding transcription factors redundantly regulate early steps of the legume-rhizobia endosymbiosis. Plant J. 79: 757–768.
Sept. 28, 2014
Tonge DP, Pashley CH, Gant TW (2014) Amplicon–Based Metagenomic Analysis of Mixed Fungal Samples Using Proton Release Amplicon Sequencing. PLoS ONE 9(4): e93849. doi:10.1371/journal.pone.0093849.
David D. Myrold Lydia H. Zeglin Janet K. Jansson (2013) The Potential of Metagenomic Approaches for Understanding Soil Microbial Processes. Soil Sci. Soc. Am. J. 78:3–10. doi:10.2136/sssaj2013.07.0287dgs . https://www.soils.org/publications/sssaj/pdfs/78/1/3.
Chao-Li Huang & Feng-Yin Jian & Hao-Jen Huang & Wen-Chi Chang & Wen-Luan Wu & Chi-Chuan Hwang & Ruey-Hua Lee & Tzen-Yuh Chiang 2014. Deciphering mycorrhizal fungi in cultivated Phalaenopsis microbiome with next-generation sequencing of multiple barcodes. Fungal Diversity (2014) 66:77–88. DOI 10.1007/s13225-014-0281-x
Neslihan Taş, Emmanuel Prestat, Jack W McFarland, Kimberley P Wickland, Rob Knight, Asmeret Asefaw Berhe, Torre Jorgenson, Mark P Waldrop and Janet K Jansson (2014) Impact of fire on active layer and permafrost microbial communities and metagenomes in an upland Alaskan boreal forest. The ISME Journal (2014) 8, 1904–1919; doi:10.1038/ismej.2014.36; published online 10 April 2014
Teiji Sota, Hideki Kagata, Yoshino Ando, Shunsuke Utsumi, Takashi Osono 2014. Metagenomic Approach Yields Insights into Fungal Diversity and Functioning. In, Species Diversity and Community Structure: Novel Patterns and Processes in Plants, Insects, and Fungi, SpringerBriefs in Biology, DOI 10.1007/978-4-431-54261-2_1, © The Author(s) 2014.
Petr Baldrian & Rubén López-Mondéjar 2014. Microbial genomics, transcriptomics and proteomics: new discoveries in decomposition research using complementary methods. Appl Microbiol Biotechnol (2014) 98:1531–1537. DOI 10.1007/s00253-013-5457-x
Chengwei Luo, Luis M. Rodriguez-R, Eric R. Johnston, Liyou Wu, Lei Cheng, Kai Xue, Qichao Tu, Ye Deng, Zhili He, Jason Zhou Shi, Mengting Maggie Yuan,cRebecca A. Sherry,d Dejun Li, Yiqi Luo, Edward A. G. Schuur, Patrick Chain, James M. Tiedj Jizhong Zhou, Konstantinos T. Konstantinidisa (2014) Soil Microbial Community Responses to a Decade of Warming as Revealed by Comparative Metagenomics. Appl. Environ. Microbiol. 2014, 80(5):1777. DOI: 10.1128/AEM.03712-13.
Michael Poulsena,1,2, Haofu Hub,1, Cai Lib,c, Zhensheng Chen Luohao Xub, Saria Otania, Sanne Nygaarda, Tania Nobre, Sylvia Klaubauf, Philipp M. Schindler, Frank Hauserg, Hailin Pan, Zhikai Yang, Anton S. M. Sonnenberg, Z. Wilhelm de Beeri, Yong Zhang, Michael J. Wingfield, Cornelis J. P. Grimmelikhuijzeng, Ronald P. de Vriese, Judith Korbf,4, Duur K. Aanend, Jun Wangb,j, Jacobus J. Boomsma, and Guojie Zhanga (2013) Complementary symbiont contributions to plant decomposition in a fungus-farming termite. www.pnas.org/cgi/doi/10.1073/pnas.1319718111
Naupaka Zimmerman, Jacques Izard, Christian Klatt, Jizhong Zhou, and Emma Aronson 2014. The unseen world: environmental microbial sequencing and identification methods for ecologists. Frontiers in Ecology and the Environment 12: 224–231.http://dx.doi.org/10.1890/130055
Carsten Suhr Jacobsen and Mathis Hjort Hjelmsø (2014) Agricultural soils, pesticides and microbial diversity. Current Opinion in Biotechnolog Volume 27, June 2014, Pages 15–20.
Brajesh K. Singh, Christopher Quince, Catriona A. Macdonald,1 Amit Khachane,1 Nadine Thomas,3 Waleed Abu Al-Soud, Søren J. Sørensen, Zhili He, Duncan White, Alex Sinclair, Bill Crooks, Jizhong Zhou and Colin D. Campbell. (2014) Loss of microbial diversity in soils is coincident with reductions in some specialized functions. Environmental Microbiology (2014) 16(8), 2408–2420
Saria Otani, Aram Mikaelyan, Tania Nobre, Lars H. Hansen, N’Golo A. Kone, Søren J. Sørensen, Duur K. Aanen, Jacobus J. Boomsma, Andreas Brune And M Ichael Poul Sen (2014) Identifying the core microbial community in the gut of fungus-growing termites. Molecular Ecology (2014) 23, 4631–4644.
Diego Javier Jiménez, Francisco Dini-Andreote and Jan Dirk van Elsas (2014) Metataxonomic profiling and prediction of functional behaviour of wheat straw degrading microbial consortia. Biotechnology for Biofuels 2014, 7:92
Sebastien Terrat, Pierre Plassart, Emilie Bourgeois, Stéphanie Ferreira, Samuel Dequiedt, Nathalie Adele-Dit-De-Renseville, Philippe Lemanceau, Antonio Bispo, Abad Chabbi, Pierre-Alain Maron and Lionel Ranjard (2014) Meta-barcoded evaluation of the ISO standard 11063 DNA extraction procedure to characterize soil bacterial and fungal community diversity and composition. Microbial Biotechnology DOI: 10.1111/1751-7915.12162
Thomas W. Crowther, Daniel S. Maynard1 , Jonathan W. Leff, Emily E. Oldfield, Rebecca L. Mcculley , Noah Fierer2 And Mark A. Brad Ford (2014) Predicting the responsiveness of soil biodiversity to deforestation: a cross-biome study. Global Change Biology (2014) 20, 2983–2994, doi: 10.1111/gcb.12565
Matthew G. Links1,2, Tigst Demeke, Tom Gr€afenhan, Janet E. Hill, Sean M. Hemmingsen4 and Tim J. Dumonceaux. 2014. Simultaneous profiling of seed-associated bacteria and fungi reveals antagonistic interactions between microorganisms within a shared epiphytic microbiome on Triticum and Brassica seeds. New Phytologist 202: 542–553
Jose L. Adrio and Arnold L. Demain (2014) Microbial Enzymes: Tools for Biotechnological Processes. Biomolecules 2014, 4, 117-139; doi:10.3390/biom4010117. (Review)
David A. Lipson1 , Cheryl R. Kuske2 , La Verne Gallegos-Graves2 And Walter C. Oechel (2014) Elevated atmospheric CO2 stimulates soil fungal diversity through increased fine root production in a semiarid shrubland ecosystem. Global Change Biology (2014) 20, 2555–2565, doi: 10.1111/gcb.12609.
Jennifer M. Talbot, Thomas D. Bruns, John W. Taylor, Dylan P. Smith, Sara Branco, Sydney I. Glassman, Sonya Erlandson, Rytas Vilgalys, Hui-Ling Liao, Matthew E. Smith, and Kabir G. Peay, (2014) Endemism and functional convergence across the North American soil mycobiome111:6341–6346, doi: 10.1073/pnas.1402584111
Melinda J. Ellison, Gavin C. Conant, Rebecca R. Cockrum, Kathy J. Austin1, Huan Truong, Michela Becchi, William R. Lamberson, And Kristi M. Cammack. 2014. Diet Alters Both the Structure and Taxonomy of the Ovine Gut Microbial Ecosystem. DNA RESEARCH 21, 115–125, (2014)
M. Kim, H. Yoon, Y.E. Kim, Y.J. Kim, W.S. Kong and J.G. Kim 2014. Comparative analysis of bacterial diversity and communities inhabiting the fairy ring of Tricholoma matsutake by barcoded pyrosequencing. Journal of Applied Microbiology Volume 117, Issue 3, pages 699–710.\
Oded Yarden 2014, Fungal association with sessile marine invertebrates Frontiers in microbiology, 5:228
Josep Peñuelas and Jaume Terradas 2014. The foliar microbiome Volume 19, Issue 5, May 2014, Pages 278–280
V.O. Ezenwa, et al. (2012) Animal behavior and the microbiome. Science, 338 (2012), pp. 198–199
D.S. Lundberg, et al. 2012. Defining the core Arabidopsis thaliana root microbiome. Nature, 488 (2012), pp. 86–90
D. Bulgarelli, et al. 2012. Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota Nature, 488 (2012), pp. 91–95
S.E. Lindow, M.T. Brandl (2003) Microbiology of the phyllosphere. Appl. Environ. Microbiol., 69 (2003), pp. 1875–1883
J.A. Vorholt (2012) Microbial life in the phyllosphere. Nat. Rev., 10 (2012), pp. 828–840
D. Bulgarelli, et al. 2013. Structure and functions of the bacterial microbiota of plants. Annu. Rev. Plant Biol., 64 (2013), pp. 807–838
G. Rastogi, et al. 2013. New insights into the structure and function of phyllosphere microbiota through high-throughput molecular approaches. FEMS Microbiol. Lett., 348 (2013), pp. 1–10
J. Peñuelas, et al. 2012. Summer season and long-term drought increase the richness of bacteria and fungi in the foliar phyllosphere of Quercus ilex in a mixed Mediterranean forest. Plant Biol., 14 (2012), pp. 565–575
C.H. Wu, et al. 2009. Developing microbe–plant interactions for applications in plant-growth promotion and disease control, production of useful compounds, remediation and carbon sequestration. Microb. Biotechnol., 2 (2009), pp. 428–440
A.E. Arnold, et al. 2003, Fungal endophytes limit pathogen damage in a tropical tree Proc. Natl. Acad. Sci. U.S.A., 100 (2003), pp. 15649–15654
K.M. Meyer, J.H.J. Leveau 2012. Microbiology of the phyllosphere: a playground for testing ecological concepts. Oecologia, 168 (2012), pp. 621–629
Ulrich Melcher, Ruchi Verma and William L. Schneider (2014) Metagenomic search strategies for interactions among plants and multiple microbes. Frontier in Plant Science 5: 1-5.
Naomichi Yamamoto, Karen C. Dannemiller, Kyle Bibby and Jordan Peccia (2014) Identification accuracy and diversity reproducibility associated with internal transcribed spacer-based fungal taxonomic library preparation. Environmental Microbiology Volume 16, Issue 9, pages 2764–2776
Cátia Pinto, Diogo Pinho, Susana Sousa, Miguel Pinheiro, Conceição Egas, Ana C. Gomes 2014. Unravelling the Diversity of Grapevine Microbiome PLOS one OI: 10.1371/journal.pone.0085622.
Venkatachalam Laksmanan, Gopinath Selvaraj and Harsh Bais 2014. Functional soil microbiome: Belowground solutions to an aboveground problem Plant Physiology July 2014 pp.114.245811
Alan J. Marsh, Orla O'Sullivana, Colin Hill, R. Paul Ross, Paul D. Cottera 2014. Sequence-based analysis of the bacterial and fungal compositions of multiple kombucha (tea fungus) samples Food Microbiology 38: 171-178.
